Yes, they changed the entire air trunk between first and second gen. First gens only have one blend door, the second gens have two. That's why we have those arms on second gens: both arms work together using one actuator motor. First gens don't have those arms, hence they rarely break.
It annoys the piss out of me when people use the term "blend door" when referring to the actuator motor. That's not a blend door, it's a damn actuator motor! I think I'm gonna cut open that air trunk in the picture so everyone can see what's inside. The blend doors are inside the air trunk. You'll never see them unless you pull the whole thing apart. Sorry, just had to rant.
Greg - seriously - there is no need to replace the heater core unless it's leaking. That's like doing a heart transplant at the same time as an appendectomy because "you have to cut the patient open anyway". There are only a few fasteners and one plug to pull in order to pull the dash out the six inches needed to replace the actuator. In order to replace the heater core, you've got to completely remove the dash from the car, which means all the fasteners along with a few dozen wire harnesses to unplug (not only from under the dash but in the engine compartment and under the car), and all the hassle of putting it back together. The "PITA levels" between the two are like a 3 and a 9.
Look at it this way: I guarantee you that once you replace the blend door motor, you'll have the first part of the dash removal down to half the time, and it'll go much smoother in the unlikely event that you need to replace the heater core. But have at it if it makes you feel better.